Publications (64)

2023

  1. Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems

    Science advances, Vol. 9, Núm. 12, pp. eadd8911

2022

  1. Assessment of selection pressure exerted on genes from complete pangenomes helps to improve the accuracy in the prediction of new genes

    Briefings in Bioinformatics, Vol. 23, Núm. 2

  2. E-learning strategies from a bioinformatics postgraduate programme to improve student engagement and completion rate

    Bioinformatics Advances, Vol. 2, Núm. 1

  3. Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes

    Nature Communications, Vol. 13, Núm. 1

  4. Influence of Agaricus bisporus establishment and fungicidal treatments on casing soil metataxonomy during mushroom cultivation

    BMC Genomics, Vol. 23, Núm. 1

2021

  1. Inhibition of the NLRP3 inflammasome prevents ovarian aging

    Science Advances, Vol. 7, Núm. 1

  2. Isolation and genomic characterization of the ibuprofen-degrading bacterium Sphingomonas strain MPO218

    Environmental Microbiology, Vol. 23, Núm. 1, pp. 267-280

  3. L-arginine ameliorates defective autophagy in gm2 gangliosidoses by mtor modulation

    Cells, Vol. 10, Núm. 11

  4. Protein-coding genes of helicobacter pylori predominantly present purifying selection though many membrane proteins suffer from selection pressure: A proposal to analyze bacterial pangenomes

    Genes, Vol. 12, Núm. 3, pp. 1-10

  5. Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators

    Briefings in bioinformatics, Vol. 22, Núm. 2, pp. 1038-1052

2020

  1. Ancient evolutionary signals of protein-coding sequences allow the discovery of new genes in the Drosophila melanogaster genome

    BMC Genomics, Vol. 21, Núm. 1

  2. CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats

    Database : the journal of biological databases and curation, Vol. 2020

  3. In silico discovery of Acinetobacter baumannii genes involved in microaerobiosis resistance

    Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Núm. 9

  4. NLRP3 Inflammasome Inhibition by MCC950 in Aged Mice Improves Health via Enhanced Autophagy and PPARα Activity

    The journals of gerontology. Series A, Biological sciences and medical sciences, Vol. 75, Núm. 8, pp. 1457-1464

  5. NLRP3 inflammasome suppression improves longevity and prevents cardiac aging in male mice

    Aging Cell, Vol. 19, Núm. 1

  6. Using AnABlast for intergenic sORF prediction in the Caenorhabditis elegans genome

    Bioinformatics, Vol. 36, Núm. 19, pp. 4827-4832

  7. Virulence role of the outer membrane protein CarO in carbapenem-resistant Acinetobacter baumannii

    Virulence, Vol. 11, Núm. 1, pp. 1727-1737

2019

  1. AnABlast: Re-searching for protein-coding sequences in genomic regions

    Methods in Molecular Biology (Humana Press Inc.), pp. 207-214

  2. Discovery of lost genes in the genome of Acinetobacter baumannii using Anablast

    Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Núm. 8

  3. Multiple genome sequences of lactobacillus pentosus strains isolated from biofilms on the skin of fermented green table olives

    Microbiology Resource Announcements, Vol. 8, Núm. 8