Global patterns in endemicity and vulnerability of soil fungi

  1. Tedersoo, Leho 1
  2. Mikryukov, Vladimir 2
  3. Zizka, Alexander 3
  4. Bahram, Mohammad 4
  5. Hagh-Doust, Niloufar 2
  6. Anslan, Sten 2
  7. Prylutskyi, Oleh 5
  8. Delgado-Baquerizo, Manuel 6
  9. Maestre, Fernando T. 7
  10. Pärn, Jaan 2
  11. Öpik, Maarja 2
  12. Moora, Mari 2
  13. Zobel, Martin 2
  14. Espenberg, Mikk 2
  15. Mander, Ülo 2
  16. Khalid, Abdul Nasir 8
  17. Corrales, Adriana 9
  18. Agan, Ahto 10
  19. Aída-M. Vasco-Palacios 11
  20. Saitta, Alessandro 12
  21. Rinaldi, Andrea C. 13
  22. Verbeken, Annemieke 14
  23. Sulistyo, Bobby P. 15
  24. Tamgnoue, Boris 16
  25. Furneaux, Brendan 17
  26. Ritter, Camila Duarte 18
  27. Nyamukondiwa, Casper 19
  28. Sharp, Cathy 20
  29. Marín, César 21
  30. Daniyal Gohar 1
  31. Darta Klavina 22
  32. Dipon Sharmah 23
  33. Dai, Dong Qin 24
  34. Nouhra, Eduardo 25
  35. Biersma, Elisabeth Machteld 26
  36. Rähn, Elisabeth 10
  37. Cameron, Erin K. 27
  38. De Crop, Eske 14
  39. Otsing, Eveli 1
  40. Davydov, Evgeny A. 28
  41. Albornoz, Felipe E. 29
  42. Brearley, Francis Q. 30
  43. Buegger, Franz 31
  44. Zahn, Geoffrey 32
  45. Bonito, Gregory 33
  46. Hiiesalu, Inga 2
  47. Barrio, Isabel C. 34
  48. Heilmann-Clausen, Jacob 35
  49. Ankuda, Jelena 36
  50. Kupagme, John Y. 1
  51. Maciá-Vicente, Jose G. 37
  52. Fovo, Joseph Djeugap 16
  53. Geml, József 38
  54. Alatalo, Juha M. 39
  55. Alvarez-Manjarrez, Julieta 40
  56. Põldmaa, Kadri 2
  57. Runnel, Kadri 2
  58. Adamson, Kalev 10
  59. Bråthen, Kari Anne 41
  60. Pritsch, Karin 31
  61. Tchan, Kassim I. 42
  62. Kęstutis Armolaitis 36
  63. Hyde, Kevin D. 43
  64. Newsham, Kevin K. 44
  65. Panksep, Kristel 45
  66. Adebola A. Lateef 46
  67. Tiirmann, Liis 1
  68. Hansson, Linda 47
  69. Lamit, Louis J. 48
  70. Saba, Malka 49
  71. Tuomi, Maria 41
  72. Gryzenhout, Marieka 50
  73. Bauters, Marijn 51
  74. Piepenbring, Meike 52
  75. Nalin Wijayawardene 53
  76. Nourou S. Yorou 42
  77. Kurina, Olavi 54
  78. Mortimer, Peter E. 55
  79. Meidl, Peter 56
  80. Kohout, Petr 57
  81. R. Henrik Nilsson 58
  82. Puusepp, Rasmus 1
  83. Drenkhan, Rein 10
  84. Garibay-Orijel, Roberto 59
  85. Godoy, Roberto 60
  86. Alkahtani, Saad 61
  87. Rahimlou, Saleh 1
  88. Dudov, Sergey V. 62
  89. Põlme, Sergei 1
  90. Soumya Ghosh 50
  91. Mundra, Sunil 63
  92. Ahmed, Talaat 39
  93. Netherway, Tarquin 4
  94. Henkel, Terry W. 64
  95. Roslin, Tomas 4
  96. Nteziryayo, Vincent 65
  97. Fedosov, Vladimir E. 62
  98. Onipchenko, Vladimir G. 62
  99. W. A. Erandi Yasanthika 43
  100. Lim, Young Woon 66
  101. Soudzilovskaia, Nadejda 67
  102. Antonelli, Alexandre 68
  103. Kõljalg, Urmas 2
  104. Abarenkov, Kessy 69
  105. Mostrar todos los/as autores/as +
  1. 1 Center of Mycology and Microbiology, University of Tartu, Tartu, Estonia
  2. 2 Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
  3. 3 Department of Biology, Philipps-University, Marburg, Germany
  4. 4 Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
  5. 5 Department of Mycology and Plant Resistance, School of Biology, V.N. Karazin Kharkiv National University, Kharkiv, Ukraine
  6. 6 Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
  7. 7 Instituto Multidisciplinar para el Estudio del Medio 'Ramón Margalef' and Departamento de Ecología, Universidad de Alicante; 03690, Alicante, Spain
  8. 8 Institute of Botany, University of the Punjab, Lahore, Pakistan
  9. 9 Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Universidad del Rosario, Bogotá, Colombi
  10. 10 Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu, Estonia
  11. 11 Escuela de Microbiologia, Universidad de Antioquia, Medellin, Antioquia, Colombia
  12. 12 Department of Agricultural, Food and Forest Sciences, University of Palermo, Palermo, Italy
  13. 13 Department of Biomedical Sciences, University of Cagliari, Cagliari, Italy
  14. 14 Department Biology, Ghent University, Ghent, Belgium
  15. 15 Department of Biomedicine, Indonesia International Institute for Life Sciences, Jakarta, Indonesia
  16. 16 Department of Crop Science, University of Dschang, Dschang, Cameroon
  17. 17 Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
  18. 18 Departamento de Zootecnia, Universidade Federal do Paraná, Curitiba, PR, Brazil
  19. 19 Department of Biological Sciences and Biotechnology, Botswana International University of Science and Technology, Palapye, Botswana
  20. 20 Natural History Museum of Zimbabwe, Bulawayo, Zimbabwe
  21. 21 Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad SantoTomás, Santiago, Chile
  22. 22 Latvian State Forest Research Insitute Silava, Salaspils, Latvia
  23. 23 Department of Botany, Jawaharlal Nehru Rajkeeya Mahavidyalaya, Pondicherry University, Port Blair, India
  24. 24 College of Biological Resource and Food Engineering, Qujing Normal University, Qujing,Yunnan, China
  25. 25 Instituto Multidisciplinario de Biología Vegetal (CONICET), Universidad Nacional de Córdoba, Cordoba, Argentina
  26. 26 Natural History Museum of Denmark, Copenhagen, Denmark
  27. 27 Department of Environmental Science, Saint Mary's University, Halifax, Nova Scotia, Canada
  28. 28 Altai State University, Barnaul, Russia
  29. 29 CSIRO Land and Water, Wembley, WA, Australia
  30. 30 Department of Natural Sciences, Manchester Metropolitan University, Manchester, UK
  31. 31 Helmholtz Zentrum München, Neuherberg, Germany
  32. 32 Utah Valley University, Orem UT, USA
  33. 33 Plant, Soil and Microbial Sciences, Michigan State University, East Lansing MI, USA
  34. 34 Faculty of Natural and Environmental Sciences, Agricultural University of Iceland, Hvanneyri, Iceland
  35. 35 Center for Macroecology, Evolution and Climate, University of Copenhagen, Copenhagen, Denmark
  36. 36 Department of Silviculture and Ecology, Institute of Forestry of Lithuanian Research Centre for Agriculture and Forestry (LAMMC). Girionys, Lithuania
  37. 37 Plant Ecology and Nature Conservation, Wageningen University & Research, Wageningen, The Netherlands
  38. 38 ELKH-EKKE Lendület Environmental Microbiome Research Group, Eszterházy Károly Catholic University, Eger, Hungary
  39. 39 Environmental Science Center, Qatar University, Doha, Qatar
  40. 40 Biology Department, Stanford University, Stanford CA, USA
  41. 41 Department of Arctic and Marine Biology, The Arctic University of Norway, Tromsø, Norway
  42. 42 Research Unit Tropical Mycology and Plants-Soil Fungi Interactions, University of Parakou, Parakou, Benin
  43. 43 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
  44. 44 NERC British Antarctic Survey, High Cross, Cambridge, UK
  45. 45 Chair of Hydrobiology and Fishery, Estonian University of Life Sciences, Tartu, Estonia
  46. 46 Department of Plant Biology, University of Ilorin, Ilorin, Nigeria
  47. 47 Gothenburg Centre for Sustainable Development, Gothenburg, Sweden
  48. 48 Department of Biology, Syracuse University, Syracuse, NY, USA; and Department of Environmental and Forest Biology, State University of New York College of Environmental Science and Forestry, Syracuse, NY, USA
  49. 49 Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
  50. 50 Department of Genetics, University of the Free State, Bloemfontein, South Africa
  51. 51 Department of Environment, Ghent University, Ghent, Belgium
  52. 52 Mycology Working Group, Goethe University Frankfurt am Main, Frankfurt am Main, Germany
  53. 53 College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan, China
  54. 54 Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
  55. 55 Center For Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
  56. 56 Freie Universität Berlin, Institut für Biologie, Berlin, Germany
  57. 57 Institute of Microbiology, Czech Academy of Sciences, Prague, Czech Republic
  58. 58 Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
  59. 59 Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, México
  60. 60 Instituto Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile
  61. 61 College of Science, King Saud University, Riyadh, Saudi Arabia
  62. 62 Department of Ecology and Plant Geography, Moscow Lomonosov State University, Moscow, Russia
  63. 63 College of Science, United Arab Emirates University, Abu Dhabi, UAE
  64. 64 Department of Biological Sciences, California State Polytechnic University, Arcata CA, USA
  65. 65 Department of Food Science and Technology, University of Burundi, Bujumbura, Burundi
  66. 66 School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Korea
  67. 67 Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
  68. 68 Royal Botanic Gardens, Kew, Richmond, United Kingdom
  69. 69 University of Tartu Natural History Museum, Tartu, Estonia
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Editor: Zenodo

Año de publicación: 2022

Tipo: Dataset

CC BY 4.0

DOI: 10.5281/ZENODO.6983158 lock_openAcceso abierto editor

Resumen

This repository contains the data associated with the paper Tedersoo et al. (2022) <em>Global patterns in endemicity and vulnerability of soil fungi</em> // <strong>Global Change Biology</strong>. DOI:10.1111/gcb.16398 Fungi are highly diverse organisms and provide a wealth of ecosystem functions. However, distribution patterns and conservation needs of fungi have been very little explored compared to charismatic animals and plants. Here we assess endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. Endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are vulnerable mostly to drought, heat and land cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests and woodlands. We suggest that there should be more attention focused on the conservation of fungi, especially tropical root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi, unicellular early-diverging groups and macrofungi in general. Given the low overlap between endemicity of fungi and macroorganisms, but high matching in conservation needs, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms in general. This repository contains the following data associated with the publication: Supplementary tables S1 - S6 (`<strong>Tables_S1-S6.xlsx</strong>`): - Table S1. Definition of ecoregions and assignment of samples to ecoregions<br> - Table S2. GSMc dataset used for endemicity analyses<br> - Table S3. Dataset used for modeling endemicity values<br> - Table S4. Dataset used for calculating and mapping vulnerability scores<br> - Table S5. Dataset used for calculating and mapping conservation value<br> - Table S6. Additional funding sources by authors OTU distribution by samples and ecoregions (`<strong>Data_taxon_assignment_to ecoregions.xlsx</strong>`) Gridded maps: Conservation priorities for all fungi and fungal groups - ConservationPriority_AllFungi.tif<br> - ConservationPriority_AM.tif<br> - ConservationPriority_EcM.tif<br> - ConservationPriority_Moulds.tif<br> - ConservationPriority_NonEcMAgaricomycetes.tif<br> - ConservationPriority_OHPs.tif<br> - ConservationPriority_Pathogens.tif<br> - ConservationPriority_Unicellular.tif<br> - ConservationPriority_Yeasts.tif The average vulnerability of all fungi and fungal groups and the model uncertainty estimates - AverageVulnerability_AllFungi.tif<br> - AverageVulnerability_AM.tif<br> - AverageVulnerability_EcM.tif<br> - AverageVulnerability_Moulds.tif<br> - AverageVulnerability_NonEcMAgaricomycetes.tif<br> - AverageVulnerability_OHPs.tif<br> - AverageVulnerability_Pathogens.tif<br> - AverageVulnerabilityUncertainty_AllFungi.tif<br> - AverageVulnerabilityUncertainty_AM.tif<br> - AverageVulnerabilityUncertainty_EcM.tif<br> - AverageVulnerabilityUncertainty_Moulds.tif<br> - AverageVulnerabilityUncertainty_NonEcMAgaricomycetes.tif<br> - AverageVulnerabilityUncertainty_OHPs.tif<br> - AverageVulnerabilityUncertainty_Pathogens.tif<br> - AverageVulnerabilityUncertainty_Unicellular.tif<br> - AverageVulnerabilityUncertainty_Yeasts.tif<br> - AverageVulnerability_Unicellular.tif<br> - AverageVulnerability_Yeasts.tif The relative importance of predicted vulnerability of all fungi - RelativeImportanceOfVulnerability_AllFungi.tif Vulnerability to drought, heat, and land cover change for all fungi - Vulnerability_AllFungi_Heat-Drought-LandCoverChange.tif<br> - VulnerabilityUncertainty_AllFungi_Heat-Drought-LandCoverChange.tif Human footprint index based on the Land-Use Harmonisation (LUH2; Hurtt et al., 2020, doi:10.5194/gmd-13-5425-2020) - `<strong>LandCoverChange_1960-2015.tif</strong>` MD5 checksums for all files (`<strong>MD5.md5</strong>`) Fungal groups:<br> - <strong>AM</strong>, arbuscular mycorrhizal fungi (including all Glomeromycota but excluding all Endogonomycetes)<br> - <strong>EcM</strong>, ectomycorrhizal fungi (excluding dubious lineages)<br> - <strong>NonEcMAgaricomycetes</strong>, non-EcM Agaricomycetes (mostly saprotrophic fungi with usually macroscopic fruiting bodies)<br> - <strong>Moulds</strong> (including Mortierellales, Mucorales, Umbelopsidales and Aspergillaceae and Trichocomaceae of Eurotiales and Trichoderma of Hypocreales)<br> - Putative <strong>pathogens</strong> (including plant, animal and fungal pathogens as primary or secondary lifestyles)<br> - <strong>OHPs</strong>, opportunistic human parasites (excluding Mortierellales)<br> - <strong>Yeasts</strong> (excluding dimorphic yeasts)<br> - <strong>Unicellular</strong>, other unicellular (non-yeast) fungi (including chytrids, aphids, rozellids and other early-diverging fungal lineages) Detailed processing steps can be found here:<br> https://github.com/Mycology-Microbiology-Center/Fungal_Endemicity_and_Vulnerability