Jose Francisco
Sedeño López
Investigador en el periodo 2022-2023
Publicaciones en las que colabora con Jose Francisco Sedeño López (21)
2023
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The little skate genome and the evolutionary emergence of wing-like fins
Nature, Vol. 616, Núm. 7957, pp. 495-503
2022
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Gain of gene regulatory network interconnectivity at the origin of vertebrates
Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11
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MacroH2As regulate enhancer-promoter contacts affecting enhancer activity and sensitivity to inflammatory cytokines
Cell Reports, Vol. 39, Núm. 12
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Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers
Nature Communications, Vol. 13, Núm. 1
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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050
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Parallel evolution of amphioxus and vertebrate small-scale gene duplications
Genome Biology, Vol. 23, Núm. 1
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Pluripotency factors regulate the onset of Hox cluster activation in the early embryo
Science Advances, Vol. 8, Núm. 28
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Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer
Frontiers in immunology, Vol. 13, pp. 901747
2021
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CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Nature Communications, Vol. 12, Núm. 1
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Straightforward protocol for allele-specific chromatin conformation capture
Gene, Vol. 767
2020
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Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications
Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864
2019
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Reprogramming Nuclear Architecture: Just a TAD
Cell Stem Cell
2018
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4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data
PLoS Computational Biology, Vol. 14, Núm. 3
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A common copy-number variant within SIRPB1 correlates with human out-of-Africa migration after genetic drift correction
PLoS ONE, Vol. 13, Núm. 3
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Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature, Vol. 564, Núm. 7734, pp. 64-70
2017
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Cis-regulatory landscapes in development and evolution
Current Opinion in Genetics and Development, Vol. 43, pp. 17-22
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Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
Genome Biology, Vol. 18, Núm. 1
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Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals
Wiley Interdisciplinary Reviews: Developmental Biology, Vol. 6, Núm. 3
2016
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics, Vol. 48, Núm. 3, pp. 336-341
2015
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Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547