Publicaciones en las que colabora con Juan Jesus Tena Aguilar (41)

2023

  1. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

2022

  1. Duplications disrupt chromatin architecture and rewire GPR101-enhancer communication in X-linked acrogigantism

    American Journal of Human Genetics, Vol. 109, Núm. 4, pp. 553-570

  2. Gain of gene regulatory network interconnectivity at the origin of vertebrates

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11

  3. Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate

    Molecular biology and evolution, Vol. 39, Núm. 4

  4. Multi-omics approach dissects cis-regulatory mechanisms underlying North Carolina macular dystrophy, a retinal enhanceropathy

    American Journal of Human Genetics, Vol. 109, Núm. 11, pp. 2029-2048

  5. Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

    Nature Communications, Vol. 13, Núm. 1

  6. Parallel evolution of amphioxus and vertebrate small-scale gene duplications

    Genome Biology, Vol. 23, Núm. 1

2021

  1. Asthma-associated genetic variants induce IL33 differential expression through an enhancer-blocking regulatory region

    Nature Communications, Vol. 12, Núm. 1

  2. CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

    Nature Communications, Vol. 12, Núm. 1

  3. Straightforward protocol for allele-specific chromatin conformation capture

    Gene, Vol. 767

2020

  1. Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications

    Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864

2018

  1. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data

    PLoS Computational Biology, Vol. 14, Núm. 3

  2. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

  3. Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum

    Nucleic Acids Research, Vol. 46, Núm. 18, pp. 9414-9431

  4. Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Núm. 16, pp. E3731-E3740

2017

  1. CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart

    PLoS Genetics, Vol. 13, Núm. 8

  2. Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements

    Genome Biology, Vol. 18, Núm. 1

2016

  1. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

    Nature Genetics, Vol. 48, Núm. 3, pp. 336-341

  2. Active DNA demethylation at enhancers during the vertebrate phylotypic period

    Nature Genetics, Vol. 48, Núm. 4, pp. 417-426

  3. Assay for transposase-accessible chromatin and circularized chromosome conformation capture, two methods to explore the regulatory landscapes of genes in zebrafish

    Methods in Cell Biology, Vol. 135, pp. 413-430