Publications by the researcher in collaboration with Ozren Bogdanovic (16)

2023

  1. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

2022

  1. Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins

    Science advances, Vol. 8, Núm. 48, pp. eabn2258

  2. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

    Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050

2021

  1. The emergence of the brain non-CpG methylation system in vertebrates

    Nature Ecology and Evolution, Vol. 5, Núm. 3, pp. 369-378

2018

  1. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

2016

  1. Active DNA demethylation at enhancers during the vertebrate phylotypic period

    Nature Genetics, Vol. 48, Núm. 4, pp. 417-426

2015

  1. Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos

    Genomics Data, Vol. 6, pp. 7-9

  2. Meis1 coordinates a network of genes implicated in eye development and microphthalmia

    Development (Cambridge), Vol. 142, Núm. 17, pp. 3009-3020

2014

  1. Embryonic DNA methylation: Insights from the genomics era

    Briefings in Functional Genomics, Vol. 13, Núm. 2, pp. 121-130

2013

  1. The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos

    Methods, Vol. 62, Núm. 3, pp. 207-215

2012

  1. Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

    Genome Research, Vol. 22, Núm. 10, pp. 2043-2053

  2. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

    Genome Research, Vol. 22, Núm. 12, pp. 2356-2367

2011

  1. Erratum: Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes (Nature Structural and Molecular Biology (2011) 18 (708-714))

    Nature Structural and Molecular Biology

  2. Erratum: Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes (Nature Structural and Molecular Biology (2011) 18 (708-714))

    Nature Structural and Molecular Biology

  3. Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes

    Nature Structural and Molecular Biology, Vol. 18, Núm. 6, pp. 708-714

  4. Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

    Genome Research, Vol. 21, Núm. 8, pp. 1313-1327