Publications (155) José Luis Gómez Skarmeta publications View referenced research data.

2024

  1. An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm

    Nature Communications, Vol. 15, Núm. 1

  2. Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci

    Genome Biology, Vol. 25, Núm. 1

  3. Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes

    Nature Ecology and Evolution

  4. Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single-cell level

    Development (Cambridge), Vol. 151, Núm. 16

2023

  1. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

  2. Wnt/β-catenin signalling is required for pole-specific chromatin remodeling during planarian regeneration

    Nature communications, Vol. 14, Núm. 1, pp. 298

2022

  1. Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins

    Science advances, Vol. 8, Núm. 48, pp. eabn2258

  2. Duplications disrupt chromatin architecture and rewire GPR101-enhancer communication in X-linked acrogigantism

    American Journal of Human Genetics, Vol. 109, Núm. 4, pp. 553-570

  3. Gain of gene regulatory network interconnectivity at the origin of vertebrates

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11

  4. Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate

    Molecular biology and evolution, Vol. 39, Núm. 4

  5. MacroH2As regulate enhancer-promoter contacts affecting enhancer activity and sensitivity to inflammatory cytokines

    Cell Reports, Vol. 39, Núm. 12

  6. Multi-omics approach dissects cis-regulatory mechanisms underlying North Carolina macular dystrophy, a retinal enhanceropathy

    American Journal of Human Genetics, Vol. 109, Núm. 11, pp. 2029-2048

  7. Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

    Nature Communications, Vol. 13, Núm. 1

  8. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

    Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050

  9. Parallel evolution of amphioxus and vertebrate small-scale gene duplications

    Genome Biology, Vol. 23, Núm. 1

  10. Pluripotency factors regulate the onset of Hox cluster activation in the early embryo

    Science Advances, Vol. 8, Núm. 28

  11. Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer

    Frontiers in immunology, Vol. 13, pp. 901747

2021

  1. 3D genomics across the tree of life reveals condensin II as a determinant of architecture type

    Science, Vol. 372, Núm. 6545

  2. ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos

    Methods in Molecular Biology (Humana Press Inc.), pp. 253-265

  3. Age-related and disease locus-specific mechanisms contribute to early remodelling of chromatin structure in Huntington’s disease mice

    Nature Communications, Vol. 12, Núm. 1