Publications by the researcher in collaboration with Juan Jesus Tena Aguilar (15)
2023
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The little skate genome and the evolutionary emergence of wing-like fins
Nature, Vol. 616, Núm. 7957, pp. 495-503
2021
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CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Nature Communications, Vol. 12, Núm. 1
2018
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Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature, Vol. 564, Núm. 7734, pp. 64-70
2016
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics, Vol. 48, Núm. 3, pp. 336-341
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Active DNA demethylation at enhancers during the vertebrate phylotypic period
Nature Genetics, Vol. 48, Núm. 4, pp. 417-426
2015
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Deep conservation of wrist and digit enhancers in fish
Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 3, pp. 803-808
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Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547
2013
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The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos
Methods, Vol. 62, Núm. 3, pp. 207-215
2012
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Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
Genome Research, Vol. 22, Núm. 10, pp. 2043-2053
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Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
Genome Research, Vol. 22, Núm. 12, pp. 2356-2367
2011
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An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation
Nature Communications, Vol. 2, Núm. 1
2010
2009
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Zebrafish Enhancer Detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish
Developmental Dynamics, Vol. 238, Núm. 9, pp. 2409-2417
2007
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Odd-skipped genes encode repressors that control kidney development
Developmental Biology, Vol. 301, Núm. 2, pp. 518-531
2005
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A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts
Genome Research, Vol. 15, Núm. 8, pp. 1061-1072