Publications

Pedro Manuel Martínez García publications View referenced research data.

28 results

2026

  1. Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes

    Nature Ecology and Evolution, Vol. 10, Núm. 2, pp. 355-371

2025

  1. Application of XAI to the prediction of CTCF binding sites

    Results in Engineering, Vol. 25

  2. Enhanced RNA-targeting CRISPR-Cas technology in zebrafish

    Nature Communications , Vol. 16, Núm. 1

  3. Enhancing R-loop prediction with high-throughput sequencing data

    NAR Genomics and Bioinformatics, Vol. 7, Núm. 2

  4. Epigenomic signatures of cis-regulatory elements in the developing mouse and pig forelimb

    Scientific data, Vol. 12, Núm. 1, pp. 598

2024

  1. Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution

    PLoS Biology, Vol. 22, Núm. 6 June

  2. Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci

    Genome Biology, Vol. 25, Núm. 1

  3. HVDC Fault Detection Performance in Mixed Overhead Line and Cable Systems

    2024 IEEE PES INNOVATIVE SMART GRID TECHNOLOGIES EUROPE, ISGT EUROPE

  4. Modulation of AAV transduction and integration targeting by topoisomerase poisons

    Molecular Therapy Methods and Clinical Development, Vol. 32, Núm. 4

  5. Rewiring of the epigenome and chromatin architecture by exogenously induced retinoic acid signaling during zebrafish embryonic development

    Nucleic Acids Research, Vol. 52, Núm. 7, pp. 3682-3701

2023

  1. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

2022

  1. Data of transcriptional effects of the merbarone-mediated inhibition of TOP2

    Data in Brief

2021

  1. Genome-wide prediction of topoisomerase IIβ binding by architectural factors and chromatin accessibility

    PLoS Computational Biology, Vol. 17, Núm. 1 January

  2. Topoisomerase IIα represses transcription by enforcing promoter-proximal pausing

    Cell Reports, Vol. 35, Núm. 2

2020

  1. A comparative study of supervised machine learning algorithms for the prediction of long-range chromatin interactions

    Genes, Vol. 11, Núm. 9, pp. 1-17

  2. Blue-light perception by epiphytic Pseudomonas syringae drives chemoreceptor expression, enabling efficient plant infection

    Molecular Plant Pathology, Vol. 21, Núm. 12, pp. 1606-1619

  3. Endogenous topoisomerase II-mediated DNA breaks drive thymic cancer predisposition linked to ATM deficiency

    Nature Communications, Vol. 11, Núm. 1

2019

  1. The Pseudomonas syringae pv. Tomato DC3000 PSPTO_0820 multidrug transporter is involved in resistance to plant antimicrobials and bacterial survival during tomato plant infection

    PLoS ONE, Vol. 14, Núm. 6

2018

  1. Analysis of Relevance and Redundance on Topoisomerase 2b (TOP2B) Binding Sites: A Feature Selection Approach

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  2. Pseudomonas syringae pv. tomato exploits light signals to optimize virulence and colonization of leaves

    Environmental Microbiology, Vol. 20, Núm. 12, pp. 4261-4280