Publicacións nas que colabora con José Luis Gómez Skarmeta (20)

2024

  1. Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single-cell level

    Development (Cambridge), Vol. 151, Núm. 16

2022

  1. Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins

    Science advances, Vol. 8, Núm. 48, pp. eabn2258

  2. Parallel evolution of amphioxus and vertebrate small-scale gene duplications

    Genome Biology, Vol. 23, Núm. 1

2020

  1. Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications

    Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864

2019

  1. Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm

    Nature Ecology and Evolution, Vol. 3, Núm. 8, pp. 1233-1240

2018

  1. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data

    PLoS Computational Biology, Vol. 14, Núm. 3

  2. A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

    Nature Genetics, Vol. 50, Núm. 4, pp. 504-509

  3. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

  4. Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Núm. 16, pp. E3731-E3740

2017

  1. Cis-regulatory landscapes in development and evolution

    Current Opinion in Genetics and Development, Vol. 43, pp. 17-22

  2. Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals

    Wiley Interdisciplinary Reviews: Developmental Biology, Vol. 6, Núm. 3

2016

  1. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

    Nature Genetics, Vol. 48, Núm. 3, pp. 336-341

2015

  1. Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547

2013

  1. Deep conservation of cis-regulatory elements in metazoans

    Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 368, Núm. 1632

2012

  1. An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

    Genome Research, Vol. 22, Núm. 4, pp. 642-655

  2. Comparative genomics of the Hedgehog loci in chordates and the origins of Shh regulatory novelties

    Scientific Reports, Vol. 2

  3. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

    Genome Research, Vol. 22, Núm. 12, pp. 2356-2367

2011

  1. Noggin and noggin-like genes control dorsoventral axis regeneration in planarians

    Current Biology, Vol. 21, Núm. 4, pp. 300-305

  2. Transphyletic conservation of developmental regulatory state in animal evolution

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 108, Núm. 34, pp. 14186-14191

2010

  1. Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the Zona Limitans Intrathalamica (ZLI) brain organizer

    EvoDevo, Vol. 1, Núm. 1