Publicaciones en las que colabora con Ignacio Maeso Ignacio (22)

2022

  1. Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins

    Science advances, Vol. 8, Núm. 48, pp. eabn2258

  2. Parallel evolution of amphioxus and vertebrate small-scale gene duplications

    Genome Biology, Vol. 23, Núm. 1

2020

  1. Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications

    Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864

  2. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

    Nature Communications, Vol. 11, Núm. 1

2019

  1. Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm

    Nature Ecology and Evolution, Vol. 3, Núm. 8, pp. 1233-1240

  2. Impact of the expression of human CTCF protein in 3D organization of the Saccharomyces cerevisiae genome

    Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Núm. 8

2018

  1. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data

    PLoS Computational Biology, Vol. 14, Núm. 3

  2. A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

    Nature Genetics, Vol. 50, Núm. 4, pp. 504-509

  3. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

  4. Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Núm. 16, pp. E3731-E3740

2017

  1. Cis-regulatory landscapes in development and evolution

    Current Opinion in Genetics and Development, Vol. 43, pp. 17-22

  2. Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals

    Wiley Interdisciplinary Reviews: Developmental Biology, Vol. 6, Núm. 3

2016

  1. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

    Nature Genetics, Vol. 48, Núm. 3, pp. 336-341

  2. Favorable genomic environments for cis-regulatory evolution: A novel theoretical framework

    Seminars in Cell and Developmental Biology, Vol. 57, pp. 2-10

2015

  1. Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547

2013

  1. Deep conservation of cis-regulatory elements in metazoans

    Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 368, Núm. 1632

2012

  1. An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

    Genome Research, Vol. 22, Núm. 4, pp. 642-655

  2. Comparative genomics of the Hedgehog loci in chordates and the origins of Shh regulatory novelties

    Scientific Reports, Vol. 2

  3. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

    Genome Research, Vol. 22, Núm. 12, pp. 2356-2367

2011

  1. Noggin and noggin-like genes control dorsoventral axis regeneration in planarians

    Current Biology, Vol. 21, Núm. 4, pp. 300-305