Publications by the researcher in collaboration with Alejandro Rubio Valle (16)

2024

  1. ASACO: Automatic and Serial Analysis of CO-expression to discover gene modifiers with potential use in drug repurposing

    Briefings in Functional Genomics, Vol. 23, Núm. 4, pp. 484-494

  2. Lipid turnover through lipophagy in the newly identified extremophilic green microalga Chlamydomonas urium

    New Phytologist, Vol. 243, Núm. 1, pp. 284-298

  3. The most exposed regions of SARS-CoV-2 structural proteins are subject to strong positive selection and gene overlap may locally modify this behavior

    mSystems, Vol. 9, Núm. 1, pp. e0071323

2023

  1. Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems

    Science advances, Vol. 9, Núm. 12, pp. eadd8911

2022

  1. Assessment of selection pressure exerted on genes from complete pangenomes helps to improve the accuracy in the prediction of new genes

    Briefings in Bioinformatics, Vol. 23, Núm. 2

  2. E-learning strategies from a bioinformatics postgraduate programme to improve student engagement and completion rate

    Bioinformatics Advances, Vol. 2, Núm. 1

  3. Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes

    Nature Communications, Vol. 13, Núm. 1

2021

  1. L-arginine ameliorates defective autophagy in gm2 gangliosidoses by mtor modulation

    Cells, Vol. 10, Núm. 11

  2. Protein-coding genes of helicobacter pylori predominantly present purifying selection though many membrane proteins suffer from selection pressure: A proposal to analyze bacterial pangenomes

    Genes, Vol. 12, Núm. 3, pp. 1-10

2020

  1. Ancient evolutionary signals of protein-coding sequences allow the discovery of new genes in the Drosophila melanogaster genome

    BMC Genomics, Vol. 21, Núm. 1

  2. CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats

    Database : the journal of biological databases and curation, Vol. 2020

  3. In silico discovery of Acinetobacter baumannii genes involved in microaerobiosis resistance

    Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Núm. 9

2019

  1. AnABlast: Re-searching for protein-coding sequences in genomic regions

    Methods in Molecular Biology (Humana Press Inc.), pp. 207-214

  2. Discovery of lost genes in the genome of Acinetobacter baumannii using Anablast

    Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Núm. 8

  3. Pangenome of acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation

    Microbial Genomics, Vol. 5, Núm. 11

2018

  1. Searching for novel genes and pseudogenes in the human Y chromosome based on ancestral coding signals

    Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Núm. 7