Publications by the researcher in collaboration with Elisa De La Calle Mustienes (18)

2023

  1. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

2021

  1. CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

    Nature Communications, Vol. 12, Núm. 1

2018

  1. A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

    Nature Genetics, Vol. 50, Núm. 4, pp. 504-509

  2. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

2016

  1. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

    Nature Genetics, Vol. 48, Núm. 3, pp. 336-341

  2. Active DNA demethylation at enhancers during the vertebrate phylotypic period

    Nature Genetics, Vol. 48, Núm. 4, pp. 417-426

2015

  1. Deep conservation of wrist and digit enhancers in fish

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 3, pp. 803-808

  2. Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547

2013

  1. The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos

    Methods, Vol. 62, Núm. 3, pp. 207-215

2012

  1. Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

    Genome Research, Vol. 22, Núm. 10, pp. 2043-2053

  2. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

    Genome Research, Vol. 22, Núm. 12, pp. 2356-2367

2011

  1. An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation

    Nature Communications, Vol. 2, Núm. 1

2010

  1. Characterization of new otic enhancers of the pou3f4 gene reveal distinct signaling pathway regulation and spatio-temporal patterns

    PLoS ONE, Vol. 5, Núm. 12

  2. Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 shfm1 locus

    PLoS Genetics, Vol. 6, Núm. 8

  3. Multiple enhancers located in a 1-Mb region upstream of POU3F4 promote expression during inner ear development and may be required for hearing

    Human Genetics, Vol. 128, Núm. 4, pp. 411-419

2009

  1. Zebrafish Enhancer Detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish

    Developmental Dynamics, Vol. 238, Núm. 9, pp. 2409-2417

2007

  1. Odd-skipped genes encode repressors that control kidney development

    Developmental Biology, Vol. 301, Núm. 2, pp. 518-531

2005

  1. A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts

    Genome Research, Vol. 15, Núm. 8, pp. 1061-1072