Ignacio
Maeso Ignacio
Investigador en el periodo 2018-2021
Publicaciones en las que colabora con José Luis Gómez Skarmeta (20)
2024
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Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single-cell level
Development (Cambridge), Vol. 151, Núm. 16
2022
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Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins
Science advances, Vol. 8, Núm. 48, pp. eabn2258
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Parallel evolution of amphioxus and vertebrate small-scale gene duplications
Genome Biology, Vol. 23, Núm. 1
2020
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Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications
Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864
2019
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Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm
Nature Ecology and Evolution, Vol. 3, Núm. 8, pp. 1233-1240
2018
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4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data
PLoS Computational Biology, Vol. 14, Núm. 3
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A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins
Nature Genetics, Vol. 50, Núm. 4, pp. 504-509
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Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature, Vol. 564, Núm. 7734, pp. 64-70
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Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation
Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Núm. 16, pp. E3731-E3740
2017
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Cis-regulatory landscapes in development and evolution
Current Opinion in Genetics and Development, Vol. 43, pp. 17-22
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Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals
Wiley Interdisciplinary Reviews: Developmental Biology, Vol. 6, Núm. 3
2016
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics, Vol. 48, Núm. 3, pp. 336-341
2015
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Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547
2013
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Deep conservation of cis-regulatory elements in metazoans
Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 368, Núm. 1632
2012
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An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement
Genome Research, Vol. 22, Núm. 4, pp. 642-655
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Comparative genomics of the Hedgehog loci in chordates and the origins of Shh regulatory novelties
Scientific Reports, Vol. 2
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Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
Genome Research, Vol. 22, Núm. 12, pp. 2356-2367
2011
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Noggin and noggin-like genes control dorsoventral axis regeneration in planarians
Current Biology, Vol. 21, Núm. 4, pp. 300-305
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Transphyletic conservation of developmental regulatory state in animal evolution
Proceedings of the National Academy of Sciences of the United States of America, Vol. 108, Núm. 34, pp. 14186-14191