Centro Andaluz de Biología del Desarrollo (CABD)
Research centre
Jose Francisco
Sedeño López
Researcher in the period 2022-2023
Publications by the researcher in collaboration with Jose Francisco Sedeño López (20)
2023
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The little skate genome and the evolutionary emergence of wing-like fins
Nature, Vol. 616, Núm. 7957, pp. 495-503
2022
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Gain of gene regulatory network interconnectivity at the origin of vertebrates
Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11
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Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers
Nature Communications, Vol. 13, Núm. 1
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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050
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Parallel evolution of amphioxus and vertebrate small-scale gene duplications
Genome Biology, Vol. 23, Núm. 1
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Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer
Frontiers in immunology, Vol. 13, pp. 901747
2021
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CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Nature Communications, Vol. 12, Núm. 1
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Straightforward protocol for allele-specific chromatin conformation capture
Gene, Vol. 767
2020
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Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications
Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864
2019
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Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification
Nature Communications, Vol. 10, Núm. 1
2018
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4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data
PLoS Computational Biology, Vol. 14, Núm. 3
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Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature, Vol. 564, Núm. 7734, pp. 64-70
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Computer simulation study of early bacterial biofilm development
Scientific Reports, Vol. 8, Núm. 1
2017
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Cis-regulatory landscapes in development and evolution
Current Opinion in Genetics and Development, Vol. 43, pp. 17-22
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Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
Genome Biology, Vol. 18, Núm. 1
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Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals
Wiley Interdisciplinary Reviews: Developmental Biology, Vol. 6, Núm. 3
2016
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics, Vol. 48, Núm. 3, pp. 336-341
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Biofilm formation-defective mutants in Pseudomonas putida
FEMS Microbiology Letters, Vol. 363, Núm. 13
2015
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Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, Núm. 24, pp. 7542-7547
2014
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Obesity-associated variants within FTO form long-range functional connections with IRX3
Nature, Vol. 507, Núm. 7492, pp. 371-375