Publicaciones en las que colabora con Jose Francisco Sedeño López (22)

2023

  1. Evolution of 3D chromatin organization at different scales

    Current Opinion in Genetics and Development, Vol. 78

  2. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

2022

  1. Gain of gene regulatory network interconnectivity at the origin of vertebrates

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11

  2. In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation

    Nature Genetics, Vol. 54, Núm. 7, pp. 1026-1036

  3. Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

    Nature Communications, Vol. 13, Núm. 1

  4. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

    Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050

  5. Parallel evolution of amphioxus and vertebrate small-scale gene duplications

    Genome Biology, Vol. 23, Núm. 1

  6. Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer

    Frontiers in immunology, Vol. 13, pp. 901747

2021

  1. CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

    Nature Communications, Vol. 12, Núm. 1

  2. Straightforward protocol for allele-specific chromatin conformation capture

    Gene, Vol. 767

2020

  1. Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications

    Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864

2019

  1. Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification

    Nature Communications, Vol. 10, Núm. 1

2018

  1. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data

    PLoS Computational Biology, Vol. 14, Núm. 3

  2. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

  3. Computer simulation study of early bacterial biofilm development

    Scientific Reports, Vol. 8, Núm. 1

2017

  1. Cis-regulatory landscapes in development and evolution

    Current Opinion in Genetics and Development, Vol. 43, pp. 17-22

  2. Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements

    Genome Biology, Vol. 18, Núm. 1

  3. Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals

    Wiley Interdisciplinary Reviews: Developmental Biology, Vol. 6, Núm. 3

2016

  1. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

    Nature Genetics, Vol. 48, Núm. 3, pp. 336-341

  2. Biofilm formation-defective mutants in Pseudomonas putida

    FEMS Microbiology Letters, Vol. 363, Núm. 13