Publicacions en què col·labora amb José Luis Gómez Skarmeta (53)
2024
-
An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm
Nature Communications, Vol. 15, Núm. 1
-
Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci
Genome Biology, Vol. 25, Núm. 1
2023
-
The little skate genome and the evolutionary emergence of wing-like fins
Nature, Vol. 616, Núm. 7957, pp. 495-503
2022
-
Duplications disrupt chromatin architecture and rewire GPR101-enhancer communication in X-linked acrogigantism
American Journal of Human Genetics, Vol. 109, Núm. 4, pp. 553-570
-
Gain of gene regulatory network interconnectivity at the origin of vertebrates
Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11
-
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate
Molecular biology and evolution, Vol. 39, Núm. 4
-
Multi-omics approach dissects cis-regulatory mechanisms underlying North Carolina macular dystrophy, a retinal enhanceropathy
American Journal of Human Genetics, Vol. 109, Núm. 11, pp. 2029-2048
-
Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers
Nature Communications, Vol. 13, Núm. 1
-
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050
-
Parallel evolution of amphioxus and vertebrate small-scale gene duplications
Genome Biology, Vol. 23, Núm. 1
2021
-
Asthma-associated genetic variants induce IL33 differential expression through an enhancer-blocking regulatory region
Nature Communications, Vol. 12, Núm. 1
-
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Nature Communications, Vol. 12, Núm. 1
-
Straightforward protocol for allele-specific chromatin conformation capture
Gene, Vol. 767
-
The Shh/Gli3 gene regulatory network precedes the origin of paired fins and reveals the deep homology between distal fins and digits
Proceedings of the National Academy of Sciences of the United States of America, Vol. 118, Núm. 46
2020
-
Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications
Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864
2018
-
4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data
PLoS Computational Biology, Vol. 14, Núm. 3
-
A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins
Nature Genetics, Vol. 50, Núm. 4, pp. 504-509
-
Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature, Vol. 564, Núm. 7734, pp. 64-70
-
Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum
Nucleic Acids Research, Vol. 46, Núm. 18, pp. 9414-9431
-
Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation
Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Núm. 16, pp. E3731-E3740