José Luis Gómez Skarmeta-rekin lankidetzan egindako argitalpenak (53)

2024

  1. An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm

    Nature Communications, Vol. 15, Núm. 1

  2. Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci

    Genome Biology, Vol. 25, Núm. 1

2023

  1. The little skate genome and the evolutionary emergence of wing-like fins

    Nature, Vol. 616, Núm. 7957, pp. 495-503

2022

  1. Duplications disrupt chromatin architecture and rewire GPR101-enhancer communication in X-linked acrogigantism

    American Journal of Human Genetics, Vol. 109, Núm. 4, pp. 553-570

  2. Gain of gene regulatory network interconnectivity at the origin of vertebrates

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 11

  3. Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate

    Molecular biology and evolution, Vol. 39, Núm. 4

  4. Multi-omics approach dissects cis-regulatory mechanisms underlying North Carolina macular dystrophy, a retinal enhanceropathy

    American Journal of Human Genetics, Vol. 109, Núm. 11, pp. 2029-2048

  5. Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

    Nature Communications, Vol. 13, Núm. 1

  6. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

    Nature Genetics, Vol. 54, Núm. 7, pp. 1037-1050

  7. Parallel evolution of amphioxus and vertebrate small-scale gene duplications

    Genome Biology, Vol. 23, Núm. 1

2021

  1. Asthma-associated genetic variants induce IL33 differential expression through an enhancer-blocking regulatory region

    Nature Communications, Vol. 12, Núm. 1

  2. CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

    Nature Communications, Vol. 12, Núm. 1

  3. Straightforward protocol for allele-specific chromatin conformation capture

    Gene, Vol. 767

  4. The Shh/Gli3 gene regulatory network precedes the origin of paired fins and reveals the deep homology between distal fins and digits

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 118, Núm. 46

2020

  1. Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications

    Molecular biology and evolution, Vol. 37, Núm. 10, pp. 2857-2864

2018

  1. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data

    PLoS Computational Biology, Vol. 14, Núm. 3

  2. A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

    Nature Genetics, Vol. 50, Núm. 4, pp. 504-509

  3. Amphioxus functional genomics and the origins of vertebrate gene regulation

    Nature, Vol. 564, Núm. 7734, pp. 64-70

  4. Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum

    Nucleic Acids Research, Vol. 46, Núm. 18, pp. 9414-9431

  5. Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Núm. 16, pp. E3731-E3740